IL_5EL5_046

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UAGGG*CCCUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAGGG,CCCUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_046 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3647

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5EL5|1|13|U|999
5EL5|1|13|A|1000
5EL5|1|13|G|1001
5EL5|1|13|G|1002
5EL5|1|13|G|1003
*
5EL5|1|13|C|1037
5EL5|1|13|C|1038
5EL5|1|13|C|1039
5EL5|1|13|U|1040
5EL5|1|13|A|1041

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 2E

30S ribosomal protein S3