IL_5EL5_246
3D structure
- PDB id
- 5EL5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CCGAAG*CGAGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5EL5_246 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.3642
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5EL5|1|1G|C|1430
5EL5|1|1G|C|1431
5EL5|1|1G|G|1432
5EL5|1|1G|A|1433
5EL5|1|1G|A|1434
5EL5|1|1G|G|1435
*
5EL5|1|1G|C|1466
5EL5|1|1G|G|1467
5EL5|1|1G|A|1468
5EL5|1|1G|G|1469
5EL5|1|1G|G|1470
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 25
- 50S ribosomal protein L14
- Chain 75
- 50S ribosomal protein L19
- Chain BA
- 30S ribosomal protein S20
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