IL_5EL5_339

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5EL5|1|1H|C|2111, 5EL5|1|1H|G|2112, 5EL5|1|1H|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_339 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.3485

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

5EL5|1|1H|G|2110
5EL5|1|1H|C|2111
5EL5|1|1H|G|2112
5EL5|1|1H|U|2113
5EL5|1|1H|A|2114
5EL5|1|1H|G|2115
5EL5|1|1H|G|2116
5EL5|1|1H|A|2117
5EL5|1|1H|U|2118
5EL5|1|1H|A|2119
5EL5|1|1H|G|2120
*
5EL5|1|1H|C|2178
5EL5|1|1H|C|2179

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain 71

50S ribosomal protein L1