IL_5EL6_090
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCACU*AAACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5EL6_090 not in the Motif Atlas
- Geometric match to IL_5TBW_062
- Geometric discrepancy: 0.3768
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5EL6|1|14|A|863
5EL6|1|14|G|864
5EL6|1|14|C|865
5EL6|1|14|A|866
5EL6|1|14|C|867
5EL6|1|14|U|868
*
5EL6|1|14|A|909
5EL6|1|14|A|910
5EL6|1|14|A|911
5EL6|1|14|C|912
5EL6|1|14|U|913
Current chains
- Chain 14
- 23S rRNA
Nearby chains
- Chain 1J
- 5S ribosomal RNA; 5S rRNA
- Chain 45
- 50S ribosomal protein L16
- Chain D5
- 50S ribosomal protein L25
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