3D structure

PDB id
5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
5EL7|1|1G|U|244, 5EL7|1|1G|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL7_190 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.0939
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

5EL7|1|1G|C|242
5EL7|1|1G|A|243
5EL7|1|1G|U|244
5EL7|1|1G|C|245
5EL7|1|1G|A|246
5EL7|1|1G|G|247
*
5EL7|1|1G|C|277
5EL7|1|1G|G|278
5EL7|1|1G|A|279
5EL7|1|1G|C|280
5EL7|1|1G|G|281
5EL7|1|1G|A|282
5EL7|1|1G|C|283
5EL7|1|1G|G|284

Current chains

Chain 1G
16S rRNA

Nearby chains

Chain 3A
30S ribosomal protein S12
Chain 8A
30S ribosomal protein S17

Coloring options:


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