IL_5FCI_175

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGU*ACGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_175 not in the Motif Atlas

Geometric match to IL_8C3A_438

Geometric discrepancy: 0.2625

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

5FCI|1|2|C|646
5FCI|1|2|G|647
5FCI|1|2|G|648
5FCI|1|2|U|649
*
5FCI|1|2|A|685
5FCI|1|2|C|686
5FCI|1|2|G|687
5FCI|1|2|G|688

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D2

40S ribosomal protein S22-A