IL_5FCI_210

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

5FCI|1|2|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_210 not in the Motif Atlas

Homologous match to IL_8P9A_444

Geometric discrepancy: 0.1679

The information below is about IL_8P9A_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5FCI|1|2|C|1339
5FCI|1|2|U|1340
5FCI|1|2|A|1341
5FCI|1|2|C|1342
*
5FCI|1|2|G|1383
5FCI|1|2|A|1384
5FCI|1|2|G|1385

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C7

40S ribosomal protein S17-A

Chain D0

40S ribosomal protein S20

Chain SR

Guanine nucleotide-binding protein subunit beta-like protein