IL_5FCI_217

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUCUAAC*GUAAUC

Length

13 nucleotides

Bulged bases

5FCI|1|2|A|1516, 5FCI|1|2|U|1517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_217 not in the Motif Atlas

Homologous match to IL_8P9A_449

Geometric discrepancy: 0.3393

The information below is about IL_8P9A_449

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22564.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5FCI|1|2|G|1488
5FCI|1|2|U|1489
5FCI|1|2|C|1490
5FCI|1|2|U|1491
5FCI|1|2|A|1492
5FCI|1|2|A|1493
5FCI|1|2|C|1494
*
5FCI|1|2|G|1513
5FCI|1|2|U|1514
5FCI|1|2|A|1515
5FCI|1|2|A|1516
5FCI|1|2|U|1517
5FCI|1|2|C|1518

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D0

40S ribosomal protein S20

Chain D9

40S ribosomal protein S29-A

Chain S3

40S ribosomal protein S3