IL_5FCI_404

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

5FCI|1|6|U|313, 5FCI|1|6|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCI_404 not in the Motif Atlas

Homologous match to IL_8P9A_391

Geometric discrepancy: 0.0742

The information below is about IL_8P9A_391

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5FCI|1|6|U|311
5FCI|1|6|A|312
5FCI|1|6|U|313
5FCI|1|6|C|314
5FCI|1|6|A|315
5FCI|1|6|A|316
*
5FCI|1|6|U|348
5FCI|1|6|U|349
5FCI|1|6|U|350
5FCI|1|6|C|351
5FCI|1|6|A|352
5FCI|1|6|A|353
5FCI|1|6|C|354
5FCI|1|6|G|355

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain d3

40S ribosomal protein S23-A

Chain s8

40S ribosomal protein S8-A