3D structure

PDB id
5FCI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
AUUAU*AGAAU
Length
10 nucleotides
Bulged bases
5FCI|1|1|A|3130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5FCI_493 not in the Motif Atlas
Homologous match to IL_8P9A_348
Geometric discrepancy: 0.0804
The information below is about IL_8P9A_348
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

5FCI|1|1|A|3103
5FCI|1|1|U|3104
5FCI|1|1|U|3105
5FCI|1|1|A|3106
5FCI|1|1|U|3107
*
5FCI|1|1|A|3127
5FCI|1|1|G|3128
5FCI|1|1|A|3129
5FCI|1|1|A|3130
5FCI|1|1|U|3131

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L9
60S ribosomal protein L9-A
Chain M6
60S ribosomal protein L16-A
Chain Q0
Ubiquitin-60S ribosomal protein L40

Coloring options:


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