IL_5FCJ_197

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FCJ_197 not in the Motif Atlas

Homologous match to IL_8P9A_428

Geometric discrepancy: 0.0753

The information below is about IL_8P9A_428

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5FCJ|1|2|G|1111
5FCJ|1|2|G|1112
5FCJ|1|2|A|1113
5FCJ|1|2|G|1114
5FCJ|1|2|U|1115
5FCJ|1|2|A|1116
5FCJ|1|2|U|1117
5FCJ|1|2|G|1118
*
5FCJ|1|2|U|1129
5FCJ|1|2|G|1130
5FCJ|1|2|A|1131
5FCJ|1|2|A|1132
5FCJ|1|2|A|1133
5FCJ|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain Q1

60S ribosomal protein L41-A