IL_5FDV_165

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

5FDV|1|1a|U|1257, 5FDV|1|1a|U|1278, 5FDV|1|1a|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_165 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.2515

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5FDV|1|1a|G|1255
5FDV|1|1a|A|1256
5FDV|1|1a|U|1257
5FDV|1|1a|G|1258
*
5FDV|1|1a|C|1277
5FDV|1|1a|U|1278
5FDV|1|1a|A|1279
5FDV|1|1a|A|1280
5FDV|1|1a|U|1281
5FDV|1|1a|C|1282

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1j

30S ribosomal protein S10

Chain 1n

30S ribosomal protein S14 type Z