IL_5FDV_263

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_263 not in the Motif Atlas

Geometric match to IL_1MZP_003

Geometric discrepancy: 0.2673

The information below is about IL_1MZP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

5FDV|1|2A|G|2124
5FDV|1|2A|G|2125
5FDV|1|2A|A|2126
5FDV|1|2A|G|2127
*
5FDV|1|2A|C|2161
5FDV|1|2A|G|2162
5FDV|1|2A|C|2163
5FDV|1|2A|C|2164
5FDV|1|2A|G|2165
5FDV|1|2A|G|2166
5FDV|1|2A|U|2167
5FDV|1|2A|G|2168
5FDV|1|2A|A|2169
5FDV|1|2A|A|2170
5FDV|1|2A|A|2171
5FDV|1|2A|U|2172
5FDV|1|2A|A|2173
5FDV|1|2A|C|2174

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains