IL_5FLX_011
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 5FLX|1|1|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_011 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.2019
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
5FLX|1|1|G|145
5FLX|1|1|G|146
5FLX|1|1|A|147
5FLX|1|1|U|148
5FLX|1|1|A|149
5FLX|1|1|A|150
5FLX|1|1|C|151
*
5FLX|1|1|G|167
5FLX|1|1|C|168
5FLX|1|1|U|169
5FLX|1|1|A|170
5FLX|1|1|A|171
5FLX|1|1|U|172
5FLX|1|1|A|173
5FLX|1|1|C|174
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain G
- 40S RIBOSOMAL PROTEIN S6
- Chain Y
- 40S RIBOSOMAL PROTEIN S24
Coloring options: