IL_5FLX_021

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

5FLX|1|1|U|368, 5FLX|1|1|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_021 not in the Motif Atlas

Geometric match to IL_4ERD_001

Geometric discrepancy: 0.3406

The information below is about IL_4ERD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

5FLX|1|1|U|366
5FLX|1|1|U|367
5FLX|1|1|U|368
5FLX|1|1|C|369
5FLX|1|1|G|370
5FLX|1|1|A|371
*
5FLX|1|1|U|393
5FLX|1|1|G|394

Current chains

Chain 1

18S RRNA

Nearby chains

Chain I

40S RIBOSOMAL PROTEIN S8

Chain L

40S RIBOSOMAL PROTEIN S11