IL_5FLX_027

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAA,UUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_027 not in the Motif Atlas

Geometric match to IL_6RA4_002

Geometric discrepancy: 0.3424

The information below is about IL_6RA4_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5FLX|1|1|C|527
5FLX|1|1|A|528
5FLX|1|1|A|529
*
5FLX|1|1|U|556
5FLX|1|1|U|557
5FLX|1|1|G|558

Current chains

Chain 1

18S RRNA

Nearby chains

Chain J

40S RIBOSOMAL PROTEIN S9

Chain e

40S RIBOSOMAL PROTEIN S30