IL_5FLX_031
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_031 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1834
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
5FLX|1|1|A|599
5FLX|1|1|G|600
5FLX|1|1|G|601
5FLX|1|1|G|602
5FLX|1|1|C|603
5FLX|1|1|A|604
5FLX|1|1|A|605
5FLX|1|1|G|606
*
5FLX|1|1|C|636
5FLX|1|1|U|637
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain C
- 40S RIBOSOMAL PROTEIN S2
- Chain J
- 40S RIBOSOMAL PROTEIN S9
- Chain e
- 40S RIBOSOMAL PROTEIN S30
Coloring options: