IL_5FLX_038

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_038 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1664

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5FLX|1|1|C|745
5FLX|1|1|C|746
5FLX|1|1|U|747
*
5FLX|1|1|A|794
5FLX|1|1|A|795
5FLX|1|1|G|796

Current chains

Chain 1

18S RRNA

Nearby chains

Chain E

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain H

40S RIBOSOMAL PROTEIN S7

Chain L

40S RIBOSOMAL PROTEIN S11