IL_5FLX_040
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_040 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.3813
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_46387.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
5FLX|1|1|U|801
5FLX|1|1|A|802
5FLX|1|1|C|803
*
5FLX|1|1|G|860
5FLX|1|1|A|861
5FLX|1|1|A|862
5FLX|1|1|U|863
5FLX|1|1|A|864
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain H
- 40S RIBOSOMAL PROTEIN S7
- Chain L
- 40S RIBOSOMAL PROTEIN S11
- Chain W
- 40S RIBOSOMAL PROTEIN S15A
- Chain X
- 40S RIBOSOMAL PROTEIN S23
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