IL_5FLX_091

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_091 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1801

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5FLX|1|1|U|1733
5FLX|1|1|G|1734
5FLX|1|1|A|1735
5FLX|1|1|G|1736
*
5FLX|1|1|C|1798
5FLX|1|1|G|1799
5FLX|1|1|A|1800
5FLX|1|1|A|1801

Current chains

Chain 1

18S RRNA

Nearby chains

Chain G

40S RIBOSOMAL PROTEIN S6

Chain I

40S RIBOSOMAL PROTEIN S8