IL_5FLX_095

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCC*GAGCG

Length

8 nucleotides

Bulged bases

5FLX|1|1|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_095 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3446

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

5FLX|1|1|C|1750
5FLX|1|1|C|1751
5FLX|1|1|C|1752
*
5FLX|1|1|G|1780
5FLX|1|1|A|1781
5FLX|1|1|G|1782
5FLX|1|1|C|1783
5FLX|1|1|G|1784

Current chains

Chain 1

18S RRNA

Nearby chains

Chain G

40S RIBOSOMAL PROTEIN S6