IL_5G2X_013

3D structure

PDB id

5G2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure a of Group II Intron Complexed with its Reverse Transcriptase

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUU,AAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5G2X_013 not in the Motif Atlas

Geometric match to IL_8GLP_196

Geometric discrepancy: 0.3062

The information below is about IL_8GLP_196

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

5G2X|1|A|A|542
5G2X|1|A|U|543
5G2X|1|A|U|544
*
5G2X|1|A|A|591
5G2X|1|A|A|592
5G2X|1|A|U|593

Current chains

Chain A

GROUP II INTRON

Nearby chains

Chain C

GROUP II INTRON-ENCODED PROTEIN LTRA