IL_5GAD_074

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5GAD|1|A|A|1801, 5GAD|1|A|C|1816, 5GAD|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_074 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.09

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5GAD|1|A|U|1798
5GAD|1|A|G|1799
5GAD|1|A|C|1800
5GAD|1|A|A|1801
5GAD|1|A|A|1802
5GAD|1|A|A|1803
5GAD|1|A|C|1804
*
5GAD|1|A|G|1813
5GAD|1|A|G|1814
5GAD|1|A|A|1815
5GAD|1|A|C|1816
5GAD|1|A|G|1817
5GAD|1|A|U|1818
5GAD|1|A|A|1819
5GAD|1|A|U|1820
5GAD|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2