3D structure

PDB id
5GAE (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC in complex with a translocating SecYEG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.33 Å

Loop

Sequence
CCUU*AAUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5GAE_084 not in the Motif Atlas
Geometric match to IL_1QBP_002
Geometric discrepancy: 0.368
The information below is about IL_1QBP_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_13404.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
10

Unit IDs

5GAE|1|A|C|2103
5GAE|1|A|C|2104
5GAE|1|A|U|2105
5GAE|1|A|U|2106
*
5GAE|1|A|A|2183
5GAE|1|A|A|2184
5GAE|1|A|U|2185
5GAE|1|A|G|2186

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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