IL_5GAE_086

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

5GAE|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAE_086 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.1014

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5GAE|1|A|G|2124
5GAE|1|A|G|2125
5GAE|1|A|A|2126
5GAE|1|A|G|2127
5GAE|1|A|G|2128
*
5GAE|1|A|C|2160
5GAE|1|A|C|2161
5GAE|1|A|G|2162
5GAE|1|A|A|2163
5GAE|1|A|C|2164
5GAE|1|A|C|2165
5GAE|1|A|U|2166
5GAE|1|A|U|2167
5GAE|1|A|G|2168
5GAE|1|A|A|2169
5GAE|1|A|A|2170
5GAE|1|A|A|2171
5GAE|1|A|U|2172
5GAE|1|A|A|2173
5GAE|1|A|C|2174

Current chains

Chain A

23S rRNA

Nearby chains