IL_5GAE_105

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAE_105 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.0854

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5GAE|1|A|C|2652
5GAE|1|A|U|2653
5GAE|1|A|A|2654
5GAE|1|A|G|2655
5GAE|1|A|U|2656
5GAE|1|A|A|2657
5GAE|1|A|C|2658
*
5GAE|1|A|G|2663
5GAE|1|A|G|2664
5GAE|1|A|A|2665
5GAE|1|A|C|2666
5GAE|1|A|C|2667
5GAE|1|A|G|2668

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6