IL_5GAE_124

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAE_124 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0535

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5GAE|1|A|G|1666
5GAE|1|A|G|1667
5GAE|1|A|A|1668
5GAE|1|A|A|1669
5GAE|1|A|C|1670
5GAE|1|A|U|1671
5GAE|1|A|A|1672
5GAE|1|A|G|1673
5GAE|1|A|G|1674
*
5GAE|1|A|C|1990
5GAE|1|A|U|1991
5GAE|1|A|G|1992
5GAE|1|A|U|1993
5GAE|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14