IL_5GAF_040

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5GAF|1|A|A|1143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAF_040 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0928

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5GAF|1|A|U|1018
5GAF|1|A|U|1019
5GAF|1|A|A|1020
5GAF|1|A|A|1021
5GAF|1|A|G|1022
5GAF|1|A|U|1023
5GAF|1|A|G|1024
*
5GAF|1|A|C|1140
5GAF|1|A|U|1141
5GAF|1|A|A|1142
5GAF|1|A|A|1143
5GAF|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36