IL_5GAG_039

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5GAG|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_039 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0924

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5GAG|1|A|U|1018
5GAG|1|A|U|1019
5GAG|1|A|A|1020
5GAG|1|A|A|1021
5GAG|1|A|G|1022
5GAG|1|A|U|1023
5GAG|1|A|G|1024
*
5GAG|1|A|C|1140
5GAG|1|A|U|1141
5GAG|1|A|A|1142
5GAG|1|A|A|1143
5GAG|1|A|A|1144

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36