IL_5GAG_044

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

5GAG|1|A|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_044 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1653

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

5GAG|1|A|G|1059
5GAG|1|A|U|1060
5GAG|1|A|U|1061
5GAG|1|A|G|1062
*
5GAG|1|A|C|1076
5GAG|1|A|A|1077
5GAG|1|A|U|1078
5GAG|1|A|C|1079

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11