IL_5GAG_110
3D structure
- PDB id
- 5GAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with SRP-SR in the closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCACUG*UAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAG_110 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.2917
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5GAG|1|A|U|2680
5GAG|1|A|C|2681
5GAG|1|A|A|2682
5GAG|1|A|C|2683
5GAG|1|A|U|2684
5GAG|1|A|G|2685
*
5GAG|1|A|U|2724
5GAG|1|A|A|2725
5GAG|1|A|A|2726
5GAG|1|A|A|2727
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L14
- Chain O
- 50S ribosomal protein L17
- Chain Q
- 50S ribosomal protein L19
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