IL_5GAH_041

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5GAH|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAH_041 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0929

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5GAH|1|A|U|1018
5GAH|1|A|U|1019
5GAH|1|A|A|1020
5GAH|1|A|A|1021
5GAH|1|A|G|1022
5GAH|1|A|U|1023
5GAH|1|A|G|1024
*
5GAH|1|A|C|1140
5GAH|1|A|U|1141
5GAH|1|A|A|1142
5GAH|1|A|A|1143
5GAH|1|A|A|1144

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36