IL_5GAH_074

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5GAH|1|A|A|1801, 5GAH|1|A|C|1816, 5GAH|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAH_074 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.09

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5GAH|1|A|U|1798
5GAH|1|A|G|1799
5GAH|1|A|C|1800
5GAH|1|A|A|1801
5GAH|1|A|A|1802
5GAH|1|A|A|1803
5GAH|1|A|C|1804
*
5GAH|1|A|G|1813
5GAH|1|A|G|1814
5GAH|1|A|A|1815
5GAH|1|A|C|1816
5GAH|1|A|G|1817
5GAH|1|A|U|1818
5GAH|1|A|A|1819
5GAH|1|A|U|1820
5GAH|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2