IL_5GAK_003
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CUCAA*UUGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_003 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3513
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
5GAK|1|1|C|8
5GAK|1|1|U|9
5GAK|1|1|C|10
5GAK|1|1|A|11
5GAK|1|1|A|12
*
5GAK|1|4|U|146
5GAK|1|4|U|147
5GAK|1|4|G|148
5GAK|1|4|A|149
5GAK|1|4|G|150
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L8-A
- Chain P
- 60S ribosomal protein L15-A
- Chain Z
- 60S ribosomal protein L25
Coloring options: