3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
CUCAA*UUGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5GAK_003 not in the Motif Atlas
Geometric match to IL_5TBW_121
Geometric discrepancy: 0.3513
The information below is about IL_5TBW_121
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_05145.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
13

Unit IDs

5GAK|1|1|C|8
5GAK|1|1|U|9
5GAK|1|1|C|10
5GAK|1|1|A|11
5GAK|1|1|A|12
*
5GAK|1|4|U|146
5GAK|1|4|U|147
5GAK|1|4|G|148
5GAK|1|4|A|149
5GAK|1|4|G|150

Current chains

Chain 1
25S rRNA
Chain 4
5.8S rRNA

Nearby chains

Chain K
60S ribosomal protein L8-A
Chain P
60S ribosomal protein L15-A
Chain Z
60S ribosomal protein L25

Coloring options:


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