IL_5GAK_013
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- AGAC*GUU
- Length
- 7 nucleotides
- Bulged bases
- 5GAK|1|1|A|338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_013 not in the Motif Atlas
- Geometric match to IL_3TD0_005
- Geometric discrepancy: 0.2865
- The information below is about IL_3TD0_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
5GAK|1|1|A|336
5GAK|1|1|G|337
5GAK|1|1|A|338
5GAK|1|1|C|339
*
5GAK|1|4|G|25
5GAK|1|4|U|26
5GAK|1|4|U|27
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L26-A
Coloring options: