IL_5GAK_025

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_025 not in the Motif Atlas

Homologous match to IL_5TBW_023

Geometric discrepancy: 0.1694

The information below is about IL_5TBW_023

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5GAK|1|1|G|725
5GAK|1|1|G|726
5GAK|1|1|G|727
5GAK|1|1|G|728
*
5GAK|1|1|U|741
5GAK|1|1|G|742
5GAK|1|1|C|743
5GAK|1|1|A|744
5GAK|1|1|C|745

Current chains

Chain 1

25S rRNA

Nearby chains

Chain S

60S ribosomal protein L18-A

Chain d

60S ribosomal protein L29