IL_5GAK_054

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GACACCACAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

5GAK|1|1|C|1196, 5GAK|1|1|A|1302, 5GAK|1|1|U|1305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_054 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1583

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5GAK|1|1|G|1194
5GAK|1|1|A|1195
5GAK|1|1|C|1196
5GAK|1|1|A|1197
5GAK|1|1|C|1198
5GAK|1|1|C|1199
5GAK|1|1|A|1200
5GAK|1|1|C|1201
5GAK|1|1|A|1202
5GAK|1|1|A|1203
5GAK|1|1|A|1204
5GAK|1|1|A|1205
*
5GAK|1|1|U|1299
5GAK|1|1|G|1300
5GAK|1|1|A|1301
5GAK|1|1|A|1302
5GAK|1|1|A|1303
5GAK|1|1|A|1304
5GAK|1|1|U|1305
5GAK|1|1|G|1306
5GAK|1|1|G|1307
5GAK|1|1|A|1308
5GAK|1|1|U|1309
5GAK|1|1|G|1310
5GAK|1|1|G|1311
5GAK|1|1|C|1312
5GAK|1|1|G|1313
5GAK|1|1|C|1314

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain F

60S ribosomal protein L3

Chain J

60S ribosomal protein L7-A

Chain Q

60S ribosomal protein L16-A

Chain h

60S ribosomal protein L33-A

Chain o

Ubiquitin-60S ribosomal protein L40

Chain s

60S ribosomal protein L10