3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
GAUA*UGC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5GAK_068 not in the Motif Atlas
Homologous match to IL_8C3A_070
Geometric discrepancy: 0.2484
The information below is about IL_8C3A_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_15698.1
Basepair signature
cWW-tSH-cSH-cWW
Number of instances in this motif group
9

Unit IDs

5GAK|1|1|G|1618
5GAK|1|1|A|1619
5GAK|1|1|U|1620
5GAK|1|1|A|1621
*
5GAK|1|1|U|1824
5GAK|1|1|G|1825
5GAK|1|1|C|1826

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain m
60S ribosomal protein L38

Coloring options:


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