IL_5GAK_082

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

5GAK|1|1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_082 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1737

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5GAK|1|1|C|1918
5GAK|1|1|G|1919
5GAK|1|1|U|1920
5GAK|1|1|A|1921
5GAK|1|1|A|1922
5GAK|1|1|C|1923
*
5GAK|1|1|G|1928
5GAK|1|1|G|1929
5GAK|1|1|A|1930
5GAK|1|1|U|1931
5GAK|1|1|A|1932
5GAK|1|1|A|1933
5GAK|1|1|G|1934

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L43-A

Chain p

60S ribosomal protein L41-A