IL_5GAK_087

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

5GAK|1|1|U|2159, 5GAK|1|1|U|2175, 5GAK|1|1|C|2179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_087 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1527

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

5GAK|1|1|C|2156
5GAK|1|1|G|2157
5GAK|1|1|A|2158
5GAK|1|1|U|2159
5GAK|1|1|G|2160
5GAK|1|1|G|2161
*
5GAK|1|1|U|2173
5GAK|1|1|G|2174
5GAK|1|1|U|2175
5GAK|1|1|U|2176
5GAK|1|1|G|2177
5GAK|1|1|A|2178
5GAK|1|1|C|2179
5GAK|1|1|G|2180

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L43-A

Chain E

60S ribosomal protein L2-A