IL_5GAK_094

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5GAK|1|1|A|2281, 5GAK|1|1|C|2287, 5GAK|1|1|C|2306

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_094 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.2017

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5GAK|1|1|C|2277
5GAK|1|1|C|2278
5GAK|1|1|A|2279
5GAK|1|1|A|2280
5GAK|1|1|A|2281
5GAK|1|1|U|2282
5GAK|1|1|G|2283
5GAK|1|1|C|2284
5GAK|1|1|C|2285
5GAK|1|1|U|2286
5GAK|1|1|C|2287
5GAK|1|1|G|2288
*
5GAK|1|1|C|2304
5GAK|1|1|G|2305
5GAK|1|1|C|2306
5GAK|1|1|G|2307

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain p

60S ribosomal protein L41-A