IL_5GAK_139

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_139 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.3073

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5GAK|1|1|A|3342
5GAK|1|1|G|3343
5GAK|1|1|A|3344
5GAK|1|1|G|3345
*
5GAK|1|1|C|3360
5GAK|1|1|G|3361
5GAK|1|1|A|3362
5GAK|1|1|U|3363

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain W

60S ribosomal protein L22-A