IL_5GAK_157
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GGGGC*GUGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_157 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.2765
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_97631.1
- Basepair signature
- cWW-L-R-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5GAK|1|1|G|725
5GAK|1|1|G|726
5GAK|1|1|G|727
5GAK|1|1|G|728
5GAK|1|1|C|729
*
5GAK|1|1|G|740
5GAK|1|1|U|741
5GAK|1|1|G|742
5GAK|1|1|C|743
5GAK|1|1|A|744
5GAK|1|1|C|745
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain S
- 60S ribosomal protein L18-A
- Chain d
- 60S ribosomal protein L29
Coloring options: