3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
CAUUU*AACUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5GAK_162 not in the Motif Atlas
Geometric match to IL_7VYX_004
Geometric discrepancy: 0.3987
The information below is about IL_7VYX_004
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

5GAK|1|1|C|1119
5GAK|1|1|A|1120
5GAK|1|1|U|1121
5GAK|1|1|U|1122
5GAK|1|1|U|1123
*
5GAK|1|1|A|1135
5GAK|1|1|A|1136
5GAK|1|1|C|1137
5GAK|1|1|U|1138
5GAK|1|1|G|1139

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain J
60S ribosomal protein L7-A
Chain d
60S ribosomal protein L29
Chain s
60S ribosomal protein L10

Coloring options:


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