IL_5GAK_162
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CAUUU*AACUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_162 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3987
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5GAK|1|1|C|1119
5GAK|1|1|A|1120
5GAK|1|1|U|1121
5GAK|1|1|U|1122
5GAK|1|1|U|1123
*
5GAK|1|1|A|1135
5GAK|1|1|A|1136
5GAK|1|1|C|1137
5GAK|1|1|U|1138
5GAK|1|1|G|1139
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain J
- 60S ribosomal protein L7-A
- Chain d
- 60S ribosomal protein L29
- Chain s
- 60S ribosomal protein L10
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