IL_5GAK_164
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- UG*CAG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_164 not in the Motif Atlas
- Geometric match to IL_8C3A_146
- Geometric discrepancy: 0.3222
- The information below is about IL_8C3A_146
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_06586.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 36
Unit IDs
5GAK|1|1|U|1564
5GAK|1|1|G|1565
*
5GAK|1|1|C|1574
5GAK|1|1|A|1575
5GAK|1|1|G|1576
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Z
- 60S ribosomal protein L25
Coloring options: