IL_5GAK_164

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_164 not in the Motif Atlas

Geometric match to IL_8C3A_146

Geometric discrepancy: 0.3222

The information below is about IL_8C3A_146

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_06586.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

5GAK|1|1|U|1564
5GAK|1|1|G|1565
*
5GAK|1|1|C|1574
5GAK|1|1|A|1575
5GAK|1|1|G|1576

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain Z

60S ribosomal protein L25