IL_5GAK_174
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CAGU*AUG
- Length
- 7 nucleotides
- Bulged bases
- 5GAK|1|1|G|984
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_174 not in the Motif Atlas
- Geometric match to IL_3RG5_002
- Geometric discrepancy: 0.3012
- The information below is about IL_3RG5_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_68118.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 27
Unit IDs
5GAK|1|1|C|982
5GAK|1|1|A|983
5GAK|1|1|G|984
5GAK|1|1|U|985
*
5GAK|1|1|A|1099
5GAK|1|1|U|1100
5GAK|1|1|G|1101
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain J
- 60S ribosomal protein L7-A
- Chain S
- 60S ribosomal protein L18-A
- Chain V
- 60S ribosomal protein L21-A
- Chain d
- 60S ribosomal protein L29
Coloring options: