IL_5GM6_004
3D structure
- PDB id
- 5GM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CA*UUAG
- Length
- 6 nucleotides
- Bulged bases
- 5GM6|1|L|A|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GM6_004 not in the Motif Atlas
- Geometric match to IL_3IGI_013
- Geometric discrepancy: 0.3145
- The information below is about IL_3IGI_013
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
5GM6|1|E|C|58
5GM6|1|E|A|59
*
5GM6|1|L|U|23
5GM6|1|L|U|24
5GM6|1|L|A|25
5GM6|1|L|G|26
Current chains
- Chain E
- Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence
- Chain L
- U2 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain H
- Cold sensitive U2 snRNA suppressor 1
- Chain I
- Pre-mRNA-splicing factor PRP11
- Chain N
- Pre-mRNA
- Chain P
- Pre-mRNA-processing protein 45
- Chain a
- Pre-mRNA-splicing factor CWC24
- Chain c
- Pre-mRNA-splicing factor CEF1
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