IL_5H4P_032
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5H4P|1|1|G|908, 5H4P|1|1|A|920, 5H4P|1|1|A|921, 5H4P|1|1|U|922
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5H4P_032 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.1887
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5H4P|1|1|G|907
5H4P|1|1|G|908
5H4P|1|1|G|909
*
5H4P|1|1|U|919
5H4P|1|1|A|920
5H4P|1|1|A|921
5H4P|1|1|U|922
5H4P|1|1|C|923
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain N
- 60S ribosomal protein L15-A
- Chain P
- 60S ribosomal protein L17-A
- Chain j
- 60S ribosomal protein L37-A
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
Coloring options: