IL_5H4P_037

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUUG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_037 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2568

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5H4P|1|1|C|1069
5H4P|1|1|U|1070
5H4P|1|1|U|1071
5H4P|1|1|G|1072
*
5H4P|1|1|C|1086
5H4P|1|1|G|1087
5H4P|1|1|U|1088
5H4P|1|1|G|1089

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L21-A

Chain b

60S ribosomal protein L29