IL_5H4P_052
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GGUAGUAG*CGAAACC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5H4P_052 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.2292
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5H4P|1|1|G|1443
5H4P|1|1|G|1444
5H4P|1|1|U|1445
5H4P|1|1|A|1446
5H4P|1|1|G|1447
5H4P|1|1|U|1448
5H4P|1|1|A|1449
5H4P|1|1|G|1450
*
5H4P|1|1|C|2354
5H4P|1|1|G|2355
5H4P|1|1|A|2356
5H4P|1|1|A|2357
5H4P|1|1|A|2358
5H4P|1|1|C|2359
5H4P|1|1|C|2360
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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